Monday, 25 September 2017

WEEK 2

BMY3101-1 MICROBIOLOGY I

WHAT HAVE I LEARN?
The class start with one hour of explanation and discussion on how to submit our mind map, all the details on how to do and where to submit the E-portfolio. Now I am very clear about what to do before and after every lessons. After a five mins break and finally we start our class - into the microbes world. A lot things have been added into the brain.
GENERAL CHARACTERISTIC OF ARCHEA
  • Prokaryotes
  • Cell wall lack of peptidoglycan 
  • Extremophiles
    Which means the archaea can survive under extreme environment for example the hydrothemal vants ( valcano underneath ocean which about 400 degree Celsius )
  • Chemotrophic
    Chemotrophs are organisms that obtain energy by the oxidation of electron donors in their environments. 
  • Chemolitotrophics
    Chemolithotrophs obtain their energy from reactions with inorganic salts
  • Halophiles 
    Which means the archaea need high concentration of salt ( NaCl) to survive 
  • Thermoacidophiles
    Which means high acidity and high temperature for example in the hot spring 
GENERAL CHARACTERISTIC OF FUNGI
  • Eukaryotes 
  • Multicellular fungi : mushroom
    Unicellular fungi : yeast
  • Cell wall is made up of chitin ( which can be found on insects )
  • most are molds (form masses of mycelia from hyphae )
    One of the molds is mucor  which commonly found in soil, digestive systems, plant surfaces, some cheeses like tomme de savoie, rotten vegetable matter and iron oxide residue in the biosorption process.
  • nutrient absorption from dead materials 
  • Saprophytes
Amanita muscaria, commonly known as the fly agaric or fly amanita, is a mushroom and psychoactive basidiomycete fungus, one of many in the genus Amanita. They are very poisonous.
GENERAL CHARACTERISTIC OF PROTOZOA
  • Eukaryotes
  • Unicellular
  • Movement : pseudopods, flagella, or cilia
  • Nutrients absorption from environment 
  • can be found in the drain
GENERAL CHARACTERISTIC OF ALGAE
  • Eukaryotes
  • Photosynthetic 
  • Unicellular or multicellular 
  • Cell wall make up pf cellulose (can be found in plant )
  • Examples : Red algae (Rhodophyta ), Brown algae (Heterokontophyta ), Green algae (Chlorophyte )

Algae are used in Wastewater Treatment facilities, reducing the need for greater amounts of toxic chemicals than are already usedAlgae can be used to capture fertilizers in runoff from farms. When subsequently harvested, the enriched algae itself can be used as fertilizer.

GENERAL CHARACTERISTIC OF VIRUS
  • Acellular - Not cellular 
  • Very small, very specific 
  • Cannot produce by themselves 
  • Can only be seen using fluorescence and electron microscope
  • Can have either DNA or RNA only ( two are not possible to be exist at the same time )


Classification of Organisms under Five Kingdom
Whittaker's 5 kingdom system


Brief History of Microbiology
Antonie van Leeuwenhoek
  • first person to create a microscope 
  • first to found out microorganisms under microscope 
  • single-celled organisms, he referred as "animalcules "
The first observations

  • The invention of microscope in 1660s by Robert Hooke

Image result for microscope by robert hooke
Robert Hooke's microscope. Perhaps his most famous observations were in his study of thin slices of cork, describing the pores, or "cells" he viewed. Hooke had discovered plant cells, or more precisely, Hooke had been viewing the cell walls in cork tissue.
  • Discover of van Leeuwenhoek led to interest of the scientific community of the time in origins of there tiny living things.
    Proposed SPONTANEOUS GENERATION : Life arise spontaneous from nonliving matter
Evidence to spontaneous generation
  • John Needham
    Heated nutrient fluids ( chicken and corn broths) before pouring covered flasks were teeming with organisms when cooled
    Microbes still found, why?
    - Flasks were not sterilize
    - Flasks were not covered tightly 
  • Lazzaro Spallanzani
    -dissapproved Needham's theory
    -Nutrient fluids heated after being scaled in a flask did not develop microbial growth
    - Spallanzani's work was cristicised on the grounds that there was not enough oxygen in the sealed flasks to support microbial life.
Pasteur's experiment to disprove theory of spontaneous generation
  • Filled several short-necked flasks with beef broth, bolied the contents
  • Some flask are sealed, some left open
  • sealed after boiling : no microorganisms.
Rudolf Virchow 
challenge theory of spontaneous, use concept of biogenesis
Biogenesis : Living cells can arise only from preexisting living cells 
( Spontaneous generation VS biogenesis issue was resolved by Louis Pasteur in 1861
  • Placed broth in open-ended long necked flasks bent into S- shaped curve
  • Boiled the contents on the flasks and cooled, unsealed 
  • No signs of life
Conclusion:
- Air passed through but curved neck trapped airborne microorganisms
- Microbial life can be present in everywhere and can be destroy by heat
- Methods can be devised to block the access of airborne microorganisms to         nutrient environments
* Basic of aseptic technique

The germ theory of disease
  • Proven by Robert Koch in 1876
  • Discovered Bacillus anthracis in blood cattle that died of anthrax 
  • He cultured the bacteria and inject into healthy animals, the animals results in sick and died, bacteria is reisolate from the died animals, its the same with the inoculated ones
  • Koch's postulates
Koch's postulates 
  • Same pathogen must be present in every case of disease
  • Pathogen must be isolated from the diseased host and grown in pure culture.
  • Pathogen from pure culture must cause the disease when inoculated into healthy laboratory animals
  • Pathogen must be isolated from the inoculated animal and must be shown to be the original organism 
Exception  to Koch's Postulates
  1. Some microorganisms could not be cultured in artificial media 
  2. Disease caused by different species of microorganisms could elicit similar symptoms.
  3.  Some pathogen can cause several disease conditions.
    For example diarrhea,
    can be cause by E.coli, Salmonella, Botulism ( food poisoning from can food )
Vaccination
  • Edward Jenner thought
    - Swinepox
    - Smallpox
    - Chicken pocx
    are related
  • Inoculated own son
  • Coined " Vaccination " and was adopted by Pasteur to represent the immunization of an individual against a particular disease




Monday, 18 September 2017

WEEK 1

BMY3101-1 MICROBIOLOGY I
WHAT HAVE I LEARN?
This is the first week. The very first time in class with Dr. Wan. I have been taught about some basic knowledge in this class. For me, this class is more interesting than what i was expected. At least, i won't fall asleep in class. Hope to learn more about microbes in the following weeks!

WHAT IS MICROBE?
also called microorganism ( microscopic organisms )
- too small to be seen with naked eyes
APPLICATION OF MICROBE

  • Medical Microbiology

          Vaccine, anitbiotic

  • Food microbiology

          Cheese, yeast

  • Industrial Microbiology
  • Immunology

          anticancer, drug

  • Agricultural Microbiology

          EM ( effective microorganism), biofertiliser

  • Genetic engineering

          gene cloning, gene replication

  • Environmental microbiology ( bioremediation- process to use microbe to reduce pollution & contamination)

          use fungus - mycoremediation
          use plant - phytoremediation

PROKARYOTES

Bacteria and archeae


  • no cell nucleus
  • no membrane bounded organelle ( unicellular)
  • can inhabit temp +140 degree celsuis
  • found in water, soil, air, hotsprings, deep beneath the Earth's crust in rocks 
Bacteria
Thiomargarita namibiensis
is a gram-negative coccoid Proteobacterium, found in the ocean sediments of the continental shelf of Namibia. It is the largest bacterium ever discovered.Cells of Thiomargarita namibiensis are large enough to be visible to the naked eye. Thiomargarita means "sulfur pearl". This refers to the appearance of the cells; they contain microscopic sulfur granules that scatter incident light, lending the cell a pearly lustre. 



Mycoplasma genitalium
,parasitic bacterium which lives in the primate bladder, waste disposal organs, genital, and respiratory tracts, is thought to be the smallest known organism capable of independent growth and reproduction. With a size of approximately 200 to 300 nmM. genitalium is an ultramicrobacterium, smaller than other small bacteria, including rickettsia and chlamydia.

Baterial Shapes
  •  Spherical

           cocci ( sing. coccus)
  •  Rod shaped

           bacilli ( sing. bacillus)
  • Slightly curved rods comma-shaped 

           vibrio

Bacterial forms
  • -Neisseria form

          diploid ( pairs)
  • -Streptococcus form

          chains
  •  Staphylococcus group together

          "brunch of grapes" cluster 

General characteristics
  • Enclosed in cell wall ( contain peptidoglycan, plant have cellulose cell wall)
  • Reproduced by binary fission


Archaea
  • Cell wall lack of peptidoglycan
  •  Extremophiles ( can survive under extreme environment )

  hydrothemal vents ~ volcano underneath ocean about 400 degree Celsius

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Antonie van Leeuwenhoek 
  •  first person to create microscope 
  •  first to found microorganisms under microscope ( animalcules )


Milk 
  •  UHT - ultra high temperature
  •  Pasteurized- kill only pathogen( harmful microbe that can cause disease )



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Important of microscopy
  • Observe microbes which cannot be seen by naked eyes
  • Types of microscope to be use

  * virus cannot be seen under normal light microscope 

Bacillus anthracis

  • cause anthrax
  • bacteria that produce endospore can remain inactivr for many years but if comes to favorable environment it begins to grow again.
  • can be preserved in powder form.
Bacillus subtilis

  • can form endospore
  • found in gastrointestinal tract of ruminants ( goats, sheep, deer )
  • helping in digest cellulose from grasses
Clostridium and Bacillus produce endospore
-Anaerobic ( can survive with no oxygen , can survive under extreme environment )

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Why some microbes are undefined ?
because they are unculturable. Cannot grow in Petri dish.

Steps to grow microbes:
  1.  Take sample ( example from swarm )
  2.  Dilute the sample
  3.  Petri dish + sample
  4. Pour and streak the sample
  5. Incubate the sample into the incubator 
          *Temp used : temp from the swarm

WHYYYY??? 
- For continuous growing 
- Replicating their habitat 

Some microbes cannot grow because some composition and ingredient needed by the particular microbes are not found. Some microbes are choosy, they need special grow factors.

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Prokaryotes 
  • Bacteria ( gram positive/ negative ) 
  • Archaea ( gram postitive/ negative )


Spirillum 
  •  Found in water ( sea)


Spirochete
  • In colon (human )
  • Anaerobic (does not require oxygen to survive )


Vibrio Cholerae 
  • cause disease cholera